Resistance to Coffee Berry Disease in Arabica Coffee Variety 'Ruiru 11'

General and specific combining ability effects for resistance to coffee berry disease (Colletotrichum coffeanum Noack sensu Hindorf) in Coffea arabica variety ‘Ruiru 11’ and its parents were estimated according to the North Carolina Design II. A set of nine male parents and eleven females were crossed in all possible combinations to generate ninety-nine single cross hybrids constituting the ‘Ruiru 11’ variety. The parents and their hybrid progenies were screened and the mean score data analyzed for possible genetic variation. The contributions of the parents to the total genetic variance were low hence the low narrow sense heritability (h²= 0.04). The male and female parents accounted for 9.36 % and 0.96 %, respectively, while their interaction effect accounted for 89.68 %. In the analysis of combining ability for resistance, ExB3.96 and Cat.90 exhibited significant negative general combining ability (GCA). Specific combining abilities (SCA) were negative and significant for Cat.86 × ExB3.99, Cat.127 × ExB3.116 and Cat.119 × ExB3.879 crosses. The implications of these results in selection for highly resistant ‘Ruiru 11’ progenies are discussed.     

Reciprocal recurrent selection applied to Coffea canephora Pierre

Summary Genetic parameters were estimated in trials planted in connection with a reciprocal recurrent selection programme applied to Coffea canephora in Côte d'Ivoire. Narrow sense heritability values, estimated from a breakdown of the analysis of variance, were high for architectural characters (0.22 to 0.78) and medium for tree vigour (0.13 to 0.40) and for bean weight (0.15 to 0.28). Calculated heritability values for the first two harvests were high (h²>0.7), but much lower for the following harvests (less than 0.2). Heritability estimates by parent-offspring regressions gave variable results, though they were often similar to those obtained by variance analysis, especially for bean weight. Phenotypic and genetic correlations between tree vigour traits and productivity were high. Bean weight was not correlated with vigour or production. Canopy diameter of 4 year-old trees was closely correlated with cumulated productivity from 2 to 5 years in the absence of development competition between trees, but the correlation was low if trees were in competition with each other. The consequences of the results for the choice of characters to be selected among intergroup hybrids or the parents of both populations are discussed.     

Genetic diversity of wild coffee (Coffea arabica L.) using molecular markers

Genetic diversity was studied using RAPD markers among119 coffee (Coffea arabica L.) individuals representing 88 accessions derived from spontaneous and subspontaneous trees in Ethiopia, the primary centre of species diversity, six cultivars grown locally in Ethiopia, and two accessions derived from the genetic populations Typica and Bourbon, spread in the 18^th century, which gave rise to the most currently grown cultivars. Twenty-nine polymorphic fragments were used to calculate a similarity index and construct dendrograms. The Ethiopian material was separated from the Typica- and Bourbon-derived accessions and classified in four groups: one with most of the collected material from southwestern Ethiopia and three from southern and southeastern Ethiopia. Almost all detected diversity was found in the southwestern group while the southern and southeastern groups presented only 59% of identified markers. The genetic distances were low between the southwestern group and the southern and southeastern groups, and between the southwestern group and the Typica- and Bourbon-derived accessions. The cultivated coffee derived from the genetic populations Typica and Bourbon appeared little differentiated from wild coffee growing in the southwest. The results supported the hypothesis that southwestern Ethiopian coffee trees could have been introduced recently in the south and southeast. A separate analysis of the 80accessions classified in the southwestern group allowed identifying particular spontaneous- and subspontaneous-derived accessions and redundancies in the collected material from southwestern Ethiopia. RAPD markers did not detect any within-collection polymorphism except for two trees that were identified as off-types in the CATIE field genebank. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic gains for yield after two back-crosses of the interspecific hybrid Libusta (Coffea canephora P. × C. liberica Bull. Ex Hiern) to C. canephora P.

The Libusta (Coffea canephora P. × C. liberica B.) programme initiated in the seventies in Côte d'Ivoire aims at improving the quality of coffee grown in low altitudes, with a yield comparable to current commercial C. canephora clones. The second generation of back‐crosses to the C. canephora (CAN) parent, BC2, are now likely to be commercially exploited as far as yield is concerned. The best BC2 progeny yielded 1386 kg of green coffee/ha/y, averaged over five harvest years. On average, the genetic gain for yield from BC1 to BC2 reached 22%. In a factorial mating design, no interaction was observed between BC1 and CAN parents, while both main effects were highly significant. This explained that observed genetic gains and further genetic gains may be achieved with appropriate strategies.     

Breeding for resistance to coffee berry disease caused by Colletrotrichum coffeanumNoack (Sensu Hindorf) in Coffea arabica L. I. Methods of preselection for resistance

Summary Two methods of preselection for resistance to coffee berry disease, by artificial inoculation of young coffee seedlings, have been developed recently at the Coffee Research Station in Kenya. The efficiency of these methods has been investigated in a series of experiments by comparing the results of the preselection tests with mature plant resistance, as indicated by visual field scores and artificial inoculation of berries and bud leaves of mature trees and including a large number of varieties and cultivars of Coffea arabica. The preselection test, by which the hypocotyl stems of 6-week old seedlings are inoculated with a spore suspension of the pathogen, proved to be more reliable than the second preselection test with shoot-tips of 10-month old plants. Correlation coefficients between the preselection test and mature plant resistance were resp. r=0.73–0.80 for the first test against r=0.60 for the latter.     

Combining Ability of Doubled Haploids in Coffea canephora P.

Fifty-five doubled haploids (DH) of Coffea canephora were crossed with either heterozygous genotypes or DH in order to study their combining ability. Three agronomic trials were established. Marked hybrid vigour was observed for all characters analyzed including yield. Large differences were evident among top-crosses involving different DH produced from the same parental clone reflecting the high level of heterozygosity of clones. Factorial mating design analysis indicated that all genetic variance was attributable to additive effects in estimates of yield as well as plant height and leaf characteristics. The general combining ability variance component was also predominant for stem girth and susceptibility to leaf rust, although effects due to interaction were detected. Some hybrid combinations had yield comparable to standard clonal varieties. The implications of such results for breeding of Coffea canephora are discussed. Particularly, the development of F₁ hybrid varieties is envisaged.     

Coffee biotechnology and its application in genetic transformation

The most important advances obtained on in vitro coffee regeneration systems and in coffee genetic transformation, drawing perspectives and scopes to further studies in these fields are presented and discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Abandonement of coffee agroforests increases insect abundance and diversity

Shade coffee including many tree species is known to support generally high biodiversity. Due to low coffee prices on the world market, many farmers have abandoned their farms, thereby creating a new ecosystem type, which has attracted increasing interest for biodiversity conservation. Here we used pyrethrum knockdown samples to compare the arthropod community on coffee plants of six traditionally managed coffee agroforests with those of six abandoned coffee agroforests in coastal Ecuador. We investigated eight randomly selected coffee shrubs per site, six of them inside and two at the edge. All arthropods were identified to orders and beetles to morphospecies. We additionally sampled the vegetation to test for vegetation-mediated effects on the arthropod community. The number of arthropod individuals was higher in abandoned than managed coffee, driven by the abundance of Arachnida, Blattaria, and Heteroptera, and higher in the edge than in the centre of the abandoned agroforests. Higher arthropod abundance appeared to be closely related to arthropod diversity, as shown for beetles (r = 0.79, n = 96). Contrary to expectations, predator-prey ratios in managed agroforests was as high as in the abandoned ones. In conclusion, abandonment of coffee agroforests greatly encourages arthropod communities, in particular in the habitat edges, and therefore, should be considered in landscape management for conservation.     

Litter production and nutrient cycling in coffee (Coffea arabica) or cacao (Theobroma cacao) plantations with shade trees

The relative importance of N fixation, organic material inputs and nutrient inputs in litterfall, as justifications for including shade trees in plantations of coffee or cacao, is discussed. According to existing data, N fixation by leguminous shade trees does not exceed 60 kg.N/ha/a. However, these trees contribute 5,000–10,000 kg. organic material/ha/a.Comparisons are made between the leguminous shade tree Erythrina poeppigiana and the non-leguminous timber tree Cordia alliodora. The former, when pruned 2 or 3 times/a., can return to the litter layer the same amount of nutrients that are applied to coffee plantations via inorganic fertilizers, even at the highest recommended rates for Costa Rica of 270 kg.N, 60 kg.P, 150 kg.K/ha/a. The annual nutrient return in this litterfall represents 90–100 percent of the nutrient store in above-ground biomass of E. poeppigiana, and hence the consequences of competition with the crop should not be a serious limitation. In the case of C. alliodora, which is not pruned, nutrient storage in the tree stems, especially of K, is a potential limiting factor to both crop and tree productivity.It is concluded that, in fertilized plantations of cacao and coffee, litter productivity is a more important shade tree characteristic than N fixation.An early version of this review was presented at the CATIE-IUFRO meeting Los Arboles de Uso Multiple en Sistemas Agroforestales, June 1985, Turrialba, Costa Rica.